Ultrafast memory-efficient short read aligner

Current versions

bowtie requires the following formula to be installed:
tbb 2018_U2 Rich and complete approach to parallelism in C++

Reverse dependencies

The following formula requires bowtie to be installed:
tophat 2.1.1_7 Spliced read mapper for RNA-Seq

Recent formula history

ilovezfs bowtie 1.2.2_p1
Michael L Heuer bowtie
Michka Popoff bowtie 1.2.0
Shaun Jackman bowtie: update 1.1.2_1 bottle for Linuxbrew.
ilovezfs bowtie: fixes stdout for builds with clang on OS X

Formula code at GitHub