cegma

Core eukaryotic genes mapping approach
http://korflab.ucdavis.edu/datasets/cegma/

Current versions
2.5

cegma requires the following formulae to be installed:
blast 2.6.0_2 Basic Local Alignment Search Tool
geneid 1.4.4 Predict genes in anonymous genomic sequences
genewise 2.4.1_1 Aligns proteins or protein HMMs to DNA
hmmer 3.1b2_1 Build profile HMMs and scan against sequence databases

Reverse dependencies

The following formula requires cegma to be installed:
rampart 0.12.2 Configurable de novo assembly pipeline

Recent formula history

Shaun Jackman cegma: update 2.5 bottle for Linuxbrew.
ilovezfs cegma 2.5
ilovezfs cegma: trigger CI
Xu Cheng remove root_url in bottle block
Shaun Jackman cegma 2.4.010312: Change single quotes to double

Formula code at GitHub