C library for high-throughput sequencing data formats

Current versions

htslib requires the following formulae to be installed:
xz 5.2.3 General-purpose data compression with high compression ratio
bzip2 1.0.6_1 Freely available high-quality data compressor
zlib 1.2.11 General-purpose lossless data-compression library
curl 7.56.0 Get a file from an HTTP, HTTPS or FTP server

Reverse dependencies

The following formulae require htslib to be installed:
stacks 1.46 Pipeline for building loci from short-read sequences
delly 0.7.7_3 Structural variant discovery by paired-end and split-read analysis
reapr 1.0.18_2 Evaluates accuracy of a genome assembly using mapped paired end reads
trinity 2.4.0_2 RNA-Seq de novo assembler
wiggletools 1.2.2_1 Compute genome-wide statistics with composable iterators

Formula history

Torsten Seemann htslib 1.6
Torsten Seemann htslib 1.5
Carlos Borroto htslib: Added configure with --enable-libcurl
ilovezfs htslib 1.4.1
ilovezfs htslib 1.4
Shaun Jackman htslib: update 1.3.2 bottle for Linuxbrew.
Jonathan Chang htslib 1.3.2
Shaun Jackman htslib: update 1.3.1 bottle for Linuxbrew.
ilovezfs htslib: remove conflicts with tabix
ilovezfs htslib 1.3.1
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