iva

Iterative Virus Assembler
https://github.com/sanger-pathogens/iva

Current versions
1.0.8
HEAD

iva requires the following formulae to be installed:
kmc 3.0.1 Fast and frugal disk based k-mer counter
mummer 3.23_2 Alignment of large-scale DNA and protein sequences
smalt 0.7.6_1 Aligns DNA sequencing reads with a reference genome
trimmomatic 0.36 Flexible read trimming tool for Illumina data

Recent formula history

ilovezfs iva: vendor numpy
Jonathan Chang iva 1.0.8
ilovezfs Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345)
JCount Use Ruby 1.9+ symbol hash keys in all formulae. (#4339)
Shaun Jackman iva: Add doi and tag bioinformatics

Formula code at GitHub