prokka

Rapid annotation of prokaryotic genomes
http://www.vicbioinformatics.com/software.prokka.shtml

Current versions
1.12
HEAD

Revision: 1

prokka requires the following formulae to be installed:
aragorn 1.2.36 tRNA and tmRNA detection
barrnap 0.8 BAsic Rapid Ribosomal RNA Predictor
blast 2.6.0_2 Basic Local Alignment Search Tool
hmmer 3.1b2_1 Build profile HMMs and scan against sequence databases
infernal 1.1.2 Search DNA databases for RNA structure and sequence similarities
minced 0.2.0 Mining CRISPRs in Environmental Datasets
parallel 20171022 Shell command parallelization utility
prodigal 2.6.3 Microbial gene finding program
tbl2asn 25.3 Automates the submission of sequence records to GenBank
rnammer 1.2 Predicts 5s/8s, 16s/18s, and 23s/28s ribosomal RNA in full genome sequences

Formula history

Torsten Seemann prokka 1.12_1 (remove bundled binaries + rpath-ing)
Shaun Jackman prokka: Do not bump the revision
Tatyana Mozgacheva prokka: Fix non-executable file in binaries/linux/
Torsten Seemann prokka 1.12 (update)
Torsten Seemann Prokka 1.11 (revision)
Shaun Jackman prokka: Add postinstall to run prokka --setupdb
Shaun Jackman prokka 1.11: Add optional dependency on rnammer
Shaun Jackman prokka: Add HEAD
Ian Lancaster prokka: tag, fix audit warnings
Saket Choudhary prokka 1.11
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