RNA-Seq de novo assembler

Current versions

trinity requires the following formulae to be installed:
express 1.5.1_10 Streaming quantification for sequencing
jellyfish 2.2.7 Fast, memory-efficient counting of DNA k-mers
trimmomatic 0.36 Flexible read trimming tool for Illumina data
gcc 7.3.0 GNU compiler collection

Reverse dependencies

The following formula requires trinity to be installed:
atram 1.3.0 Automated target restricted assembly method

Recent formula history

ilovezfs trinity: skip C++ stdlib check
ilovezfs trinity 2.5.1
ilovezfs trinity: fix checksum
Michka Popoff trinity: revision for boost
ilovezfs trinity: revision for gcc

Formula code at GitHub