Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

a5 20160825 Pipeline for de novo assembly of microbial genomes
abacas 1.3.1 Automatic contiguation of assembled sequences
abinit 8.6.3 Atomic-scale first-principles simulation software
abyss-explorer 1.3.4_1 Visualize genome sequence assemblies
acado 1.2.2beta Toolkit for Automatic Control and Dynamic Optimization
ace-corrector 20150501 correct substitution errors in Illumina reads
adam 0.22.0 Genomics analysis platform built on Apache Avro, Apache Spark and Parquet
adapterremoval 2.2.2 Adapter trimming, consensus, and read merging
adol-c 2.6.3 Automatic Differentiation by Overloading in C/C++
afra 2.1 Alignmen-free support values
alembic 1.7.5 Open computer graphics interchange framework
alglib 3.12.0 Cross-platform numerical analysis library
alien-hunter 1.7 Identification of Horizontally Acquired DNA
allpaths-lg 52488 Short read genome assembler
alpscore 2.1.0 Applications and Libraries for Physics Simulations
amos 3.1.0_2 Modular Open-Source Assembler
analysis 0.8.8_4 Programs for the (pre-NGS-era) analysis of population-genetic data.
andi 0.11 Estimate evolutionary distance between similar genomes
ann 1.1.2 Library for Approximate Nearest Neighbor Searching
anvio 3 Analysis and visualization platform for ‘omics data.
apophenia 1.0_2 C library for statistical and scientific computing
aragorn 1.2.38 tRNA and tmRNA detection
arb 2.11.1 C library for arbitrary-precision floating-point ball arithmetic
arcs 1.0.1 Scaffold genome sequence assemblies using 10x Genomics data
aribas 1.64 Interactive interpreter for integer and multi-precision arithmetic
arow++ 0.1.2
arrayfire 3.3.2_1 General purpose GPU library
art 20160605_1 Simulation tools to generate synthetic NGS reads
artemis 16.0.17 Genome browser and annotation tool
ascii_plots 1.0 Quick and dirty data analysis