Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

bact 0.13 Machine learning tool for labeled orderd trees
bali-phy 2.3.8 Simultaneous Bayesian estimation of alignment and phylogeny
bam-readcount 0.8.0 Count DNA sequence reads at each position in BAM files
bam2wig 1.0.0 Generating read coverage profile (WIG file) from a BAM file.
bamhash 1.0 Hash BAM and FASTQ files to verify data integrity
bamm 2.5.0_1 Bayesian analysis of macroevolutionary mixture models on phylogenies
bamtools 2.4.1_1 C++ API and command-line toolkit for BAM data
bamutil 1.0.13 Collection of tools to work with SAM/BAM files.
barrnap 0.8 BAsic Rapid Ribosomal RNA Predictor
bayestraits 3.0_1 trait evolution on phylogenies
bbtools 37.02 suite of Brian Bushnell's tools for manipulating reads
bcalm 2.0.0 de Bruijn graph compaction in low memory
bcftools 1.4.1 Tools for BCF/VCF files and variant calling from samtools
beagle 2.1.2 Evaluate the likelihood of sequence evolution on trees
beast2 2.4.7 Bayesian evolutionary analysis by sampling trees
bedops 2.4.29 Set and statistical operations on genomic data of arbitrary scale
bedtools 2.26.0 bedtools: A powerful toolset for genome arithmetic
beetl 0.10.0 Burrows-Wheeler Extended Tool Library
bfc 181 High-performance error correction for Illumina resequencing data
bioawk 1.0 awk modified for biological data
biobloomtools 2.0.13_1 BioBloom Tools (BBT): Bloom filter for bioinformatics
biocgal 0.9.6-beta Tool for computing genome assembly likelihoods
biointerchange 2.0.4+105 Scaling and integrating genomics data
biomake 0.1.2 GNU-Make-like utility for managing builds and complex workflows
biopieces 2.0 Bioinformatic framework
biopp 2.2.0 Bio++ is a set of C++ libraries for Bioinformatics.
bitseq 0.7.5 RNA-seq analysis library
blasr 2.2 PacBio long read aligner
blast 2.6.0_2 Basic Local Alignment Search Tool
blat 36 Genomic sequence search tool