Package listing

This is a listing of all Homebrew packages available via the alternative repository Homebrew/homebrew-science.
bact
Machine learning tool for labeled orderd trees
Current Version: 0.13
bali-phy
Simultaneous Bayesian estimation of alignment and phylogeny
Current Version: 2.3.7_1
bam-readcount
Count DNA sequence reads at each position in BAM files
Current Version: 0.8.0
bamhash
Hash BAM and FASTQ files to verify data integrity
Current Version: 1.0
bamm
Bayesian analysis of macroevolutionary mixture models on phylogenies
Current Version: 2.5.0
bamtools
C++ API and command-line toolkit for BAM data
Current Version: 2.4.1
bamutil
Collection of tools to work with SAM/BAM files.
Current Version: 1.0.13
barrnap
BAsic Rapid Ribosomal RNA Predictor
Current Version: 0.8
bayestraits
trait evolution on phylogenies
Current Version: 3.0
bbtools
suite of Brian Bushnell's tools for manipulating reads
Current Version: 37.02
bcalm
de Bruijn graph compaction in low memory
Current Version: 2.0.0
bcftools
Tools for BCF/VCF files and variant calling from samtools
Current Version: 1.4
beagle
Evaluate the likelihood of sequence evolution on trees
Current Version: 2.1.2
beast
Bayesian Evolutionary Analysis Sampling Trees
Current Version: 1.8.4
bedops
Set and statistical operations on genomic data of arbitrary scale
Current Version: 2.4.26
bedtools
bedtools: A powerful toolset for genome arithmetic
Current Version: 2.26.0
beetl
Burrows-Wheeler Extended Tool Library
Current Version: 0.10.0
bfc
High-performance error correction for Illumina resequencing data
Current Version: 181
bioawk
awk modified for biological data
Current Version: 1.0
biobloomtools
BioBloom Tools (BBT): Bloom filter for bioinformatics
Current Version: 2.0.13_1
biocgal
Tool for computing genome assembly likelihoods
Current Version: 0.9.6-beta
biointerchange
Scaling and integrating genomics data
Current Version: 2.0.4+105
biomake
GNU-Make-like utility for managing builds and complex workflows
Current Version: 0.1.1
biopieces
Bioinformatic framework
Current Version: 2.0
biopp
Bio++ is a set of C++ libraries for Bioinformatics.
Current Version: 2.2.0
bitseq
RNA-seq analysis library
Current Version: 0.7.5
blasr
PacBio long read aligner
Current Version: 2.2
blast
Basic Local Alignment Search Tool
Current Version: 2.6.0
blat
Genomic sequence search tool
Current Version: 36
blaze-lib
C++ math library for dense and sparse arithmetic
Current Version: 2.4_1