Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.
p4est
Dynamic management of a collection (a forest) of adaptive octrees in parallel
Current Version: 1.1_3
packmol
Packing optimization for molecular dynamics simulations
Current Version: 17.125
paml
phylogenetic analysis by maximum likelihood
Current Version: 4.9e
pandaseq
PAired-eND Assembler for DNA sequences
Current Version: 2.11
paraview
Multi-platform data analysis and visualization application
Current Version: 5.3.0
parmetis
MPI-based library for graph/mesh partitioning and computing fill-reducing orderings
Current Version: 4.0.3_4
parsnp
Microbial core genome alignment and SNP detection
Current Version: 1.2
pastix
Parallel solver for sparse linear systems based on direct methods
Current Version: 5.2.2.22_3
pathd8
Estimates divergence times in large phylogenetic trees
Current Version: 1.0
pathvisio
Extendable Pathway Analysis Toolbox
Current Version: 3.2.4
paxtools
Java library for accessing and manipulating data in BioPAX format.
Current Version: 4.3.1
pbsuite
PBJelly and PBHoney: Software for PacBio sequencing data
Current Version: 14.7.14
pcap

Current Version: 2005-06-07
pcb
Interactive printed circuit board editor
Current Version: 4.0.0
pcl
Library for 2D/3D image and point cloud processing
Current Version: 1.8.0_6
pear
Ultrafast, memory-efficient and highly accurate pair-end read merger
Current Version: 0.9.10
perf
Program to measure the performance of the predictions you submit
Current Version: 5.11
petsc
Scalable solution of models that use partial differential equations
Current Version: 3.7.6_2
phipack
A quick and robust genomic recombination test
Current Version: 2013-03-05
phlawd
Phylogenetic dataset construction
Current Version: 3.4a_2
phylip
Package of programs for inferring phylogenies
Current Version: 3.696
phyml
Fast maximum likelihood-based phylogenetic inference
Current Version: 3.2.0
phyutility
analyze and modify trees and data matrices
Current Version: 2.7.1
phyx
Command-line tools for phylogenetic analyses
Current Version: 0.99_1
picard-tools
Tools for manipulating HTS data and formats
Current Version: 2.9.0
piler
Analyze repetitive DNA found in genome sequences
Current Version: 1.0_1
pilercr
Finding CRISPR repeats in genome sequences
Current Version: 1.06
pillow
Python Imaging Library fork
Current Version: 4.1.1
pilon
Improve draft assemblies and find variation
Current Version: 1.22
plasma
Parallel Linear Algebra for Multicore Architectures
Current Version: 2.8.0_2