Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

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p4est 1.1_3 Dynamic management of a collection (a forest) of adaptive octrees in parallel
paml 4.9e phylogenetic analysis by maximum likelihood
pandaseq 2.11 PAired-eND Assembler for DNA sequences
parallel-netcdf 1.7.0_1 NetCDF library for parallel I/O
paraview 5.3.0_2 Multi-platform data analysis and visualization application
parmetis 4.0.3_4 MPI-based library for graph/mesh partitioning and computing fill-reducing orderings
parsnp 1.2_1 Microbial core genome alignment and SNP detection
pastix 5.2.2.22_3 Parallel solver for sparse linear systems based on direct methods
pathd8 1.0 Estimates divergence times in large phylogenetic trees
pathvisio 3.2.4 Extendable Pathway Analysis Toolbox
paxtools 4.3.1 Java library for accessing and manipulating data in BioPAX format.
pbsuite 14.7.14 PBJelly and PBHoney: Software for PacBio sequencing data
pcap 2005-06-07
pear 0.9.10 Ultrafast, memory-efficient and highly accurate pair-end read merger
perf 5.11 Program to measure the performance of the predictions you submit
petsc 3.7.6_3 Scalable solution of models that use partial differential equations
phipack 2013-03-05 Quick and robust genomic recombination test
phlawd 3.4b Phylogenetic dataset construction
phylip 3.696 Package of programs for inferring phylogenies
phyml 3.3.20170530 Fast maximum likelihood-based phylogenetic inference
phyutility 2.7.1 Analyze and modify trees and data matrices
phyx 0.99_1 Command-line tools for phylogenetic analyses
picard-tools 2.12.1 Tools for manipulating HTS data and formats
piler 1.0_1 Analyze repetitive DNA found in genome sequences
pilercr 1.06 Finding CRISPR repeats in genome sequences
pilon 1.22 Improve draft assemblies and find variation
plasma 2.8.0_2 Parallel Linear Algebra for Multicore Architectures
platypusvar 0.8.1 It is variant-detection in high-throughput sequencing data
plink 1.07 Whole genome association analysis toolset
plink2 1.90b3_2 Analyze genotype and phenotype data