Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

r8s 1.8_2 Estimate rates and divergence times on phylogenetic trees
racon 0.5.0 Compute consensus sequence of a genome assembly of long uncorrected reads
radx 20171016 Software package for radial radar data
rainbow 2.0.4 Short reads clustering and local assembly
rampart 0.12.2 Configurable de novo assembly pipeline
rapsearch2 2.24_3 Reduced Alphabet based Protein similarity Search
rate4site 3.0.0 Compute site-specific evolutionary rates for an amino-acid sequence
raxml 8.2.11_1 Maximum likelihood analysis of large phylogenies
ray 2.3.1_2 Parallel genome assemblies for parallel DNA sequencing
readseq 2.1.30 Read and reformat biosequences
readsim 1.6
reapr 1.0.18_2 Evaluates accuracy of a genome assembly using mapped paired end reads
recon 1.08
repeatmasker 4.0.7_1 Program that screens DNA sequences for interspersed repeats
repeatmodeler 1.0.8_1 De-novo repeat family identification and modeling package
repeatscout 1.0.5
rmblast 2.2.28_1 RepeatMasker compatible version of the standard NCBI BLAST suite
rml-mmc 2.8.0
rna-star 2.5.3a RNA-seq aligner
rnammer 1.2 Predicts 5s/8s, 16s/18s, and 23s/28s ribosomal RNA in full genome sequences
ropebwt 20130801
ropebwt2 r181 Incremental construction of FM-index for DNA sequences