Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

sailfish 0.10.1_2 Rapid mapping-based RNA-Seq isoform quantification
sais 2.4.1
sally 1.0.0
salmon 0.8.2_1 Transcript-level quantification from RNA-seq reads
salt 2.4_1
sambamba 0.6.6 Tools for working with SAM/BAM data
samblaster 0.1.24 Tool to mark duplicates in SAM files
samtools@0.1 0.1.20 Tools for manipulating next-generation sequencing data
sara 1.13 Reachability analysis in petri nets
sbagen 1.4.5
scamp 2.0.4_1
scarpa 0.241
scotch 6.0.4_5 Graph/mesh/hypergraph partitioning, clustering, and ordering
scotch5 5.1.12b_2
scram 0.16.0_1 Probabilistic Risk Analysis Tool
sdsl-lite 2.1.1_1 Succinct Data Structure Library 2.0
seq-gen 1.3.4 Simulator of DNA and amino acid sequence evolution
seqan 2.3.2 C++ library of sequence algorithms and data structures
seqdb 0.2.1 High-throughput compression of FASTQ data
sequel 1.0.2 Improving the Accuracy of Genome Assemblies
sextractor 2.19.5
sfscode 20150910 Population genetics simulator
sga 0.10.15 De novo genome assembler based on the concept of string graphs
shark 3.1.4_3 Machine leaning library
shogun 6.0.0 Large scale machine learning toolbox
shrimp 2.2.3
sickle 1.33
sigrok-cli 0.7.0 Command-line client for sigrok
silo 4.10.2_4 LLNL mesh and field Silo I/O library. Allows creating databases for VisIt.
simpleitk 1.0.1 Simplified layer built on top of ITK