Package listing

This is a listing of all Homebrew packages available in the tap repository Homebrew/homebrew-science.

t-coffee 10.00.r1613 Compute, Manipulate Alignment of DNA-RNA-Protein Sequences, Structures
tabtk 0.1 Toolkit for processing TAB-delimited format
tagdust 2.33 Generic method to extract reads from sequencing data
tamarin-prover 1.2.2 Automated security protocol verification tool
tasr 1.6.2 Targeted assembler of short sequence reads
tbl2asn 25.6 Automates the submission of sequence records to GenBank
tetgen 1.5.0
therion 5.3.16_4 Processes survey data and generates maps or 3D models of caves
ticcutils 0.17 Tools for the TiCC Software Stack
timbl 6.4.10 Memory-based learning algorithms
tisean 3.0.1_4 Nonlinear time series analysis
tmv-cpp 0.75 user-friendly C++ interface to BLAS and LAPACK
topcat 4.4 Interactive graphical viewer and editor for tabular data
tophat 2.1.1_7 Spliced read mapper for RNA-Seq
trans-abyss 1.5.5 Assemble RNA-Seq data using ABySS
trans_proteomic_pipeline 4.8.0 TransProteomicPipeline: Collection of proteomics tools
transdecoder 5.0.2 Identifies candidate coding regions within transcript sequences
transpose 2.0 Fast efficient tranpose of plain text matrix data
transrate-tools 1.0.0.beta4 Aggregate BAM read mapping information
transtermhp 2.09
trf 4.09 Tandem repeats finder
triangle 1.6
trilinos 12.10.1_5 Solution of large-scale, multi-physics problems
trimadap 0.1 Fast but inaccurate adapter trimmer for Illumina reads
trimal 1.4.1 Automated alignment trimming in phylogenetic analyses
trimmomatic 0.36 Flexible read trimming tool for Illumina data
trinity 2.5.1 RNA-Seq de novo assembler
trnascan 1.23 tRNA detection in large-scale genome sequence