Analysis and visualization platform for ‘omics data.

Current versions

Revision: 1

anvio requires the following formulae to be installed:
prodigal 2.6.2
hmmer 3.1b2_1 Build profile HMMs and scan against sequence databases
sqlite 3.20.1 Command-line interface for SQLite
gsl 2.4 Numerical library for C and C++
hdf5 1.10.1 File format designed to store large amounts of data
diamond 0.8.38 Accelerated BLAST compatible local sequence aligner
mcl 14-137 Clustering algorithm for graphs
muscle 3.8.1551 Multiple sequence alignment program
blast 2.6.0_1 Basic Local Alignment Search Tool

Formula history

Michka Popoff anvio: revision for hdf5
Özcan Esen anvio 2.3.1
ilovezfs anvio: revision for scipy
Özcan Esen anvio 2.2.2