Analysis and visualization platform for ‘omics data.

Current versions

anvio requires the following formulae to be installed:
prodigal 2.6.3 Microbial gene finding program
hmmer 3.1b2_1 Build profile HMMs and scan against sequence databases
sqlite 3.21.0 Command-line interface for SQLite
gsl 2.4 Numerical library for C and C++
diamond 0.9.13 Accelerated BLAST compatible local sequence aligner
mcl 14-137 Clustering algorithm for graphs
muscle 3.8.1551 Multiple sequence alignment program
blast 2.6.0_2 Basic Local Alignment Search Tool
numpy 1.13.3 Package for scientific computing with Python
scipy 1.0.0 Software for mathematics, science, and engineering

Formula history

Özcan Esen anvio 3
Özcan Esen anvio 2.4.0
Tatyana Mozgacheva anvio: revision for gsl
Özcan Esen anvio 2.3.2
Michka Popoff anvio: revision for hdf5
Özcan Esen anvio 2.3.1
ilovezfs anvio: revision for scipy
Özcan Esen anvio 2.2.2